HotStart Taq DNA Polymerase basic kit, 500 U

Hot Start Taq DNA polymerase is a thermostable DNA polymerase manufactured with high sensitivity, specificity, and DNA-free traits. It is certified as RNase, DNase, and E. coli DNA free, that guarantees reproducible and efficient PCR reactions. 

 

SKU:PD012S
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HotStart Taq DNA Polymerase basic kit, 500 U

Product Details

HotStart Taq DNA Polymerase basic kit, 500 U

Hot Start Taq DNA polymerase is a thermostable DNA polymerase manufactured with high sensitivity, specificity, and DNA-free traits. It is certified as RNase, DNase, and E. coli DNA free, that guarantees reproducible and efficient PCR reactions. 

Taq DNA Polymerase is a thermostable enzyme that catalyzes 5’→3′ synthesis of DNA. The enzyme has no detectable 3’→5′ proofreading exonuclease activity but possesses low 5’→3′ exonuclease activity. Hot Start Taq DNA Polymerase has high processivity up to 5 kb, while it can reliably amplify a substrate as low as 6-12 copies per reaction. 

Source:

The Enzyme is purified from an E. coli strain carrying a plasmid with Taq DNA polymerase gene from Thermus aquaticus YT-1. After production, it is chemically modified into a Hot Start enzyme, that requires excessive thermal activation while ensuring high specificity. 

 

Unit definition:

One unit is defined as the amount of enzyme required to catalyze the incorporation of 10 nmoles of dNTPs into acid insoluble material in 30 minutes at 72oC.

 

Reagents supplied:

 Cat no: PD012S

Cat No

Description

Tubes No.

PD002-0.100

HotStart Taq DNA polymerase, 5u/μl, 500 U

(50 mM Tris-HCl (pH 7.9 @ 25oC), 50 mM KCl, 0.1 mM EDTA, 50% glycerol, 0.5% IGEPAL, 1 mM DTT, 0.5% Tween-20)

1

BR006-1.4

10x Taq DNA polymerase Buffer with 15mM MgCl2

(100 mM Tris-HCl (pH 8.3), 500 mM KCl, 15mM MgCl2)

1

BR007-1.4

10x Taq DNA polymerase Buffer w/o MgCl2

(100 mM Tris-HCl (pH 8.3), 500 mM KCl)

1

BR008-1.4

25mM MgCl2

1

BR028-250

dNTPs mix 10mM each, 0.250 ml

1

BR033-1.8

Nuclease Free Water, 1.8 ml

2

 

 PCR Guidelines:

 Reactions may be set at room temperature.

 

PCR recommended reaction:

Components

25μl assay

Final Concentration/

Quantity (25μl assay)

50μl assay

Final Concentration/

Quantity (50μl assay)

10x Taq pol. Buffer with 15mM MgCl2

2.5μl

1x

5μl

1x

dNTP mix 10mM each

0.5μl

0.2 mM each

1μl

0.2 mM each

10μΜ forward primer

0.5μl

0.2-0.8 μM

1 μl

0.2-0.5 μM

10μΜ reverse primer

0.5μl

0.2-0.8 μM

1 μl

0.2-0.5 μM

Template DNA

Variable

10 fg-500 ng*

Variable

100 fg-500 ng*

Hot Start Taq DNA pol. (5u/μl)

0.25μl

1.25 u/25 μl reaction

(0.05 u/μl)

0.25-0.5μl

1.25-2.5 u/50 μl reaction

(0.025-0.05 u/μl)

Sterile ultrapure water

Up to 25 μl

 

Up to 50 μl

 

* Substrate quantity is mostly dependent on the complexity and the purity of substrate and should be defined after testing for each primer set/substrate combination. For highly pure DNA substrates (OD260/OD280 ~ 2 and OD260/OD230~ 2,2) dissolved in water for molecular biology, 5-10 copies of specific target substrate are enough for end product gel visualization.

 

 PCR recommended conditions:

Step

Temperature

Time

Initial denaturation/Activation

95oC

15 min

25-40 cycles

Denaturation

95oC

30sec

Annealing

45-68oC*

20sec

Extension

72oC

1min/kb

 

 

 

Final extension

72oC

5 min

Hold

4-12oC

Indefinitely

*Annealing temperature depends on primers’ Tm

 Initial activation for 15 minutes is very important in the case of reaction with very low PCR template copies and for obtaining the maximum efficiency in qPCR setups (either Taqman or Sybr Green chemistry).   DO NOT USE LOWER THAN 10 min!!

 

Functional Quality Control:

HotStart Taq DNA Polymerase has been tested for performance in the polymerase chain reaction (PCR) using 1.25 units of enzyme to amplify:

  1. a 800-bp region of Human genomic DNA using 0.25 ng of coli gDNA as substrate in a 25μl reaction.
  2. a 5000-bp region of Lambda DNA using 20ng as substrate in a 50μl reaction.

Other Quality Controls:
Certified as DNase-RNase free using fluorescently labeled RNase and DNase probes. DNA free contamination is tested extensively through PCR for the detection of E.coli 16S ribosomal DNA. More details concerning quality controls could be found in respective Certificate of analysis.

Shipping
Shipped on blue ice or dry ice

Storage conditions
Store at -20οC ± 5οC

Shelf life:
24 months post production

 

HotStart Taq DNA Polymerase PD012S

Highly robust detection of targets from human genomic DNA, even with minute amounts of enzyme units per reaction vs a competitor that uses the same chemistry for Hot start Taq DNA pol. preparation.

 

Other applications:

  1. qPCR on DNA templates

PCR recommended reaction: 

Taq Man qPCR with kit components 

Taq man qPCR EQ protocol 

Components 

 Standard 20μl assay  

Final Concentration/ 

Quantity (20 μl assay) 

Components 

Standard 20μl assay  

Final Concentration/ 

Quantity (20 μl assay) 

10x Taq pol. Buffer w/o MgCl2 

2μl 

1x 

5x One Step RT-qPCR buffer* (BR030) 

5 μl 

1x 

25mM MgCl2 

2 μl 

1.5 -4 mM 

dNTP mix 10mM each 

0.4μl 

0.2 mM each  

10μΜ forward primer 

0.8μl  

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower  

10μΜ forward primer 

0.8 μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10μΜ reverse primer 

0.8μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10μΜ reverse primer 

0.8 μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10 μΜ Taqman Probe  

0.4 μl 

0.2-0.5 μM (~ half or lower than the primer conc.) 

10 μΜ Taqman Probe  

0.4 μl 

0.2-0.5 μM (~ half or lower than the primer conc.) 

Template DNA  

Variable 

10 fg-500 ng 

Template DNA  

variable 

10 fg-500 ng 

Hot Start Taq DNA pol. (5u/μl) 

0.25-0.5 μl 

1.25-2.5 u/20 μl reaction 

(0.0625-0.125 u/μl) 

Hot Start Taq DNA pol. (5u/μl) 

0.25-0.5 μl 

1.25-2.5 u/20 μl reaction 

(0.0625-0.125 u/μl) 

Sterile ultrapure water 

Up to 20 μl 

N/A 

Sterile ultrapure water 

Up to 20 μl 

N/A 

*BR030 may be separately purchased. It contains an EQ optimized chemistry for qPCR applications along with dNTPs. 

 

 Similar setup is followed for Sybr Green based qPCR assays. Instead of Probe one may add Sybr Green in final concentrations of 0.2-2x. 

 

Recommended conditions: 

Step 

Temperature 

Time 

Initial denaturation/Activation 

95oC 

15 min 

3 steps program 

2 Steps program 

Denaturation 

95o

10-15 sec 

Denaturation 

95o

10-15 sec 

Annealing 

45-68oC* 

10-20 sec 

Annealing/ extension 

(Tm-8oC)* 

30 sec 

Extension 

72o

1min/kb 

(6 sec for 100 bp ampliqons) 

*Annealing temperature depends on primers’ Tm. For two steps programs the primers are designed to have a Tm ~ 68. For most primers sets tested, optimal Ta was found 8oC below the Tm temp. Do not incubate lower than 55 oC, to avoid lower polymerase activity!

Initial activation for 15 minutes is very important in the case of reaction with very low PCR template copies and for obtaining the maximum efficiency in qPCR setups (either TaqMan or SYBR Green chemistry).   DO NOT USE LOWER THAN 10 min!! 

 

2.One-Step RT qPCR 

PCR recommended reaction: 

One Step RT-qPCR with kit components 

Taq man qPCR EQ protocol 

Components 

 Standard 20μl assay  

Final Concentration/ 

Quantity (20 μl assay) 

Components 

Standard 20μl assay  

Final Concentration/ 

Quantity (20 μl assay) 

10x Taq pol. Buffer w/o MgCl2 

2μl 

1x 

5x One Step RT-qPCR buffer* (BR030) 

5 μl 

1x 

25mM MgCl2 

2 μl 

1.5 -4 mM 

dNTP mix 10mM each 

0.4μl 

0.2 mM each  

10μΜ forward primer 

0.8μl  

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower  

10μΜ forward primer 

0.8 μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10μΜ reverse primer 

0.8μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10μΜ reverse primer 

0.8 μl 

0.2-0.8 μM 

For single target 0.4 μM for multiplex 0.2 μΜ or lower 

10 μΜ Taqman Probe  

0.4 μl 

0.2-0.5 μM (~ half or lower than the primer conc.) 

10 μΜ Taqman Probe  

0.4 μl 

0.2-0.5 μM (~ half or lower than the primer conc.) 

Template DNA  

Variable 

10 fg-500 ng 

Template DNA  

variable 

10 fg-500 ng 

Hot Start Taq DNA pol. (5u/μl) 

0.25-0.5 μl 

1.25-2.5 u/20 μl reaction 

(0.0625-0.125 u/μl) 

Hot Start Taq DNA pol. (5u/μl) 

0.25-0.5 μl 

1.25-2.5 u/20 μl reaction 

(0.0625-0.125 u/μl) 

Engineered MMLV Reverse transcriptase, 200u/μl (RN001S) 

0.05 μl 

8-10 u/20 μL reaction 

(0.4-0.5 u/μl) 

Engineered MMLV Reverse transcriptase, 200u/μl 

(RN001S) 

0.05 μl 

8-10 u/20 μL reaction 

(0.4-0.5 u/μl) 

Sterile ultrapure water 

Up to 20 μl 

N/A 

Sterile ultrapure water 

Up to 20 μl 

N/A 

*BR030 may be separately purchased. It contains an EQ optimized chemistry for qPCR applications along with dNTPs.  RN001S is part of the RN012S kit, which may be separately purchased. 

 

Similar setup is followed for SYBR Green based qPCR assays. Instead of Probe one may add SYBR Green in final concentrations of 0.2-2x. 

One Step-RT recommended conditions: 

Step 

Temperature 

Time 

Reverse Transcription step 

55 o

15 min 

Initial denaturation/Activation of Taq DNA polymerase/Reverse Transcriptase deactivation 

95oC 

15 min 

3 steps program (30-40 cycles) 

2 Steps program (30-40 cycles) 

Denaturation 

95o

10-15 sec 

Denaturation 

95o

10-15 sec 

Annealing 

45-68oC* 

10-20 sec 

Annealing/ extension 

(Tm-8oC)* 

30 sec 

Extension 

72o

1min/kb 

(6 sec for 100 bp ampliqons) 

*Annealing temperature depends on primers’ Tm. For two steps programs the primers are designed to have a Tm ~ 68. For most primers sets tested, optimal Ta was  found 8oC below the Tm temp. Do not incubate lower than 55 oC  to avoid lower polymerase activity!

 

If you are new user needing qPCR related user-friendly solutions:

  1. Check ready-to-use 2x  SybrGreen qPCR  mix with Hot Start properties check RN014S kit (ΕQ 2x qPCR Μaster Μix Green kit, w/o ROX (TM))
  2. Check the One-step RT qPCR analysis kit (RN010S) the highly sensitive kit for RNA analysis in one single reaction.
  3. ((((Check out/ Stay tuned for our universal qPCR kit for more flexibility in your DNA/RNA quantification studies (this product may be released in parallel with Sheep/Goat Pox kit or as a separate entity)))) 

 

Q&A – Frequently Asked Questions

What is HotStart Taq DNA Polymerase and how does it differ from regular Taq?

HotStart Taq DNA Polymerase is a thermostable DNA polymerase that has been chemically modified to remain inactive until thermal activation. This ensures high specificity by preventing non-specific amplification and primer-dimer formation during reaction setup. It requires excessive thermal activation at 95°C for 15 minutes.

What is the maximum amplicon size this enzyme can produce?

HotStart Taq DNA Polymerase has high processivity up to 5 kb and can reliably amplify substrates as low as 6-12 copies per reaction. The functional quality control tests include amplification of a 5000-bp region of Lambda DNA.

Why is the 15-minute initial activation step so important?

The 15-minute initial activation at 95°C is critical for reactions with very low PCR template copies and for obtaining maximum efficiency in qPCR setups (either TaqMan or SYBR Green chemistry). Using less than 10 minutes may significantly affect reaction efficiency.

Does this enzyme have proofreading activity?

No, HotStart Taq DNA Polymerase has no detectable 3'→5' proofreading exonuclease activity. However, it does possess low 5'→3' exonuclease activity, which is typical for Taq polymerase.

Is this enzyme compatible with qPCR applications?

Yes, HotStart Taq DNA Polymerase is compatible with qPCR applications including both TaqMan and SYBR Green chemistry. It can also be used for One-Step RT-qPCR when combined with the appropriate reverse transcriptase.

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HotStart Taq DNA Polymerase basic kit, 500 U