Hot Start Taq DNA polymerase is a thermostable DNA polymerase manufactured with high sensitivity, specificity, and DNA-free traits. It is certified as RNase, DNase, and E. coli DNA free, that guarantees reproducible and efficient PCR reactions.
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Hot Start Taq DNA polymerase is a thermostable DNA polymerase manufactured with high sensitivity, specificity, and DNA-free traits. It is certified as RNase, DNase, and E. coli DNA free, that guarantees reproducible and efficient PCR reactions.
Taq DNA Polymerase is a thermostable enzyme that catalyzes 5’→3′ synthesis of DNA. The enzyme has no detectable 3’→5′ proofreading exonuclease activity but possesses low 5’→3′ exonuclease activity. Hot Start Taq DNA Polymerase has high processivity up to 5 kb, while it can reliably amplify a substrate as low as 6-12 copies per reaction.
Source:
The Enzyme is purified from an E. coli strain carrying a plasmid with Taq DNA polymerase gene from Thermus aquaticus YT-1. After production, it is chemically modified into a Hot Start enzyme, that requires excessive thermal activation while ensuring high specificity.
Unit definition:
One unit is defined as the amount of enzyme required to catalyze the incorporation of 10 nmoles of dNTPs into acid insoluble material in 30 minutes at 72oC.
Reagents supplied:
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Cat no: PD012S |
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Cat No |
Description |
Tubes No. |
|
PD002-0.100 |
HotStart Taq DNA polymerase, 5u/μl, 500 U (50 mM Tris-HCl (pH 7.9 @ 25oC), 50 mM KCl, 0.1 mM EDTA, 50% glycerol, 0.5% IGEPAL, 1 mM DTT, 0.5% Tween-20) |
1 |
|
BR006-1.4 |
10x Taq DNA polymerase Buffer with 15mM MgCl2 (100 mM Tris-HCl (pH 8.3), 500 mM KCl, 15mM MgCl2) |
1 |
|
BR007-1.4 |
10x Taq DNA polymerase Buffer w/o MgCl2 (100 mM Tris-HCl (pH 8.3), 500 mM KCl) |
1 |
|
BR008-1.4 |
25mM MgCl2 |
1 |
|
BR028-250 |
dNTPs mix 10mM each, 0.250 ml |
1 |
|
BR033-1.8 |
Nuclease Free Water, 1.8 ml |
2 |
PCR Guidelines:
Reactions may be set at room temperature.
PCR recommended reaction:
|
Components |
25μl assay |
Final Concentration/ Quantity (25μl assay) |
50μl assay |
Final Concentration/ Quantity (50μl assay) |
|
10x Taq pol. Buffer with 15mM MgCl2 |
2.5μl |
1x |
5μl |
1x |
|
dNTP mix 10mM each |
0.5μl |
0.2 mM each |
1μl |
0.2 mM each |
|
10μΜ forward primer |
0.5μl |
0.2-0.8 μM |
1 μl |
0.2-0.5 μM |
|
10μΜ reverse primer |
0.5μl |
0.2-0.8 μM |
1 μl |
0.2-0.5 μM |
|
Template DNA |
Variable |
10 fg-500 ng* |
Variable |
100 fg-500 ng* |
|
Hot Start Taq DNA pol. (5u/μl) |
0.25μl |
1.25 u/25 μl reaction (0.05 u/μl) |
0.25-0.5μl |
1.25-2.5 u/50 μl reaction (0.025-0.05 u/μl) |
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Sterile ultrapure water |
Up to 25 μl |
|
Up to 50 μl |
|
* Substrate quantity is mostly dependent on the complexity and the purity of substrate and should be defined after testing for each primer set/substrate combination. For highly pure DNA substrates (OD260/OD280 ~ 2 and OD260/OD230~ 2,2) dissolved in water for molecular biology, 5-10 copies of specific target substrate are enough for end product gel visualization.
PCR recommended conditions:
|
Step |
Temperature |
Time |
|
Initial denaturation/Activation |
95oC |
15 min |
|
25-40 cycles |
||
|
Denaturation |
95oC |
30sec |
|
Annealing |
45-68oC* |
20sec |
|
Extension |
72oC |
1min/kb |
|
|
|
|
|
Final extension |
72oC |
5 min |
|
Hold |
4-12oC |
Indefinitely |
*Annealing temperature depends on primers’ Tm
Initial activation for 15 minutes is very important in the case of reaction with very low PCR template copies and for obtaining the maximum efficiency in qPCR setups (either Taqman or Sybr Green chemistry). DO NOT USE LOWER THAN 10 min!!
Functional Quality Control:
HotStart Taq DNA Polymerase has been tested for performance in the polymerase chain reaction (PCR) using 1.25 units of enzyme to amplify:
Other Quality Controls:
Certified as DNase-RNase free using fluorescently labeled RNase and DNase probes. DNA free contamination is tested extensively through PCR for the detection of E.coli 16S ribosomal DNA. More details concerning quality controls could be found in respective Certificate of analysis.
Shipping
Shipped on blue ice or dry ice
Storage conditions
Store at -20οC ± 5οC
Shelf life:
24 months post production
Highly robust detection of targets from human genomic DNA, even with minute amounts of enzyme units per reaction vs a competitor that uses the same chemistry for Hot start Taq DNA pol. preparation.
Other applications:
PCR recommended reaction:
|
Taq Man qPCR with kit components |
Taq man qPCR EQ protocol |
||||
|
Components |
Standard 20μl assay |
Final Concentration/ Quantity (20 μl assay) |
Components |
Standard 20μl assay |
Final Concentration/ Quantity (20 μl assay) |
|
10x Taq pol. Buffer w/o MgCl2 |
2μl |
1x |
5x One Step RT-qPCR buffer* (BR030) |
5 μl |
1x |
|
25mM MgCl2 |
2 μl |
1.5 -4 mM |
|||
|
dNTP mix 10mM each |
0.4μl |
0.2 mM each |
|||
|
10μΜ forward primer |
0.8μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
10μΜ forward primer |
0.8 μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
|
10μΜ reverse primer |
0.8μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
10μΜ reverse primer |
0.8 μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
|
10 μΜ Taqman Probe |
0.4 μl |
0.2-0.5 μM (~ half or lower than the primer conc.) |
10 μΜ Taqman Probe |
0.4 μl |
0.2-0.5 μM (~ half or lower than the primer conc.) |
|
Template DNA |
Variable |
10 fg-500 ng |
Template DNA |
variable |
10 fg-500 ng |
|
Hot Start Taq DNA pol. (5u/μl) |
0.25-0.5 μl |
1.25-2.5 u/20 μl reaction (0.0625-0.125 u/μl) |
Hot Start Taq DNA pol. (5u/μl) |
0.25-0.5 μl |
1.25-2.5 u/20 μl reaction (0.0625-0.125 u/μl) |
|
Sterile ultrapure water |
Up to 20 μl |
N/A |
Sterile ultrapure water |
Up to 20 μl |
N/A |
*BR030 may be separately purchased. It contains an EQ optimized chemistry for qPCR applications along with dNTPs.
Similar setup is followed for Sybr Green based qPCR assays. Instead of Probe one may add Sybr Green in final concentrations of 0.2-2x.
Recommended conditions:
|
Step |
Temperature |
Time |
|||||
|
Initial denaturation/Activation |
95oC |
15 min |
|||||
|
3 steps program |
2 Steps program |
||||||
|
Denaturation |
95oC |
10-15 sec |
Denaturation |
95oC |
10-15 sec |
||
|
Annealing |
45-68oC* |
10-20 sec |
Annealing/ extension |
(Tm-8oC)* |
30 sec |
||
|
Extension |
72oC |
1min/kb (6 sec for 100 bp ampliqons) |
|||||
*Annealing temperature depends on primers’ Tm. For two steps programs the primers are designed to have a Tm ~ 68. For most primers sets tested, optimal Ta was found 8oC below the Tm temp. Do not incubate lower than 55 oC, to avoid lower polymerase activity!
Initial activation for 15 minutes is very important in the case of reaction with very low PCR template copies and for obtaining the maximum efficiency in qPCR setups (either TaqMan or SYBR Green chemistry). DO NOT USE LOWER THAN 10 min!!
PCR recommended reaction:
|
One Step RT-qPCR with kit components |
Taq man qPCR EQ protocol |
||||
|
Components |
Standard 20μl assay |
Final Concentration/ Quantity (20 μl assay) |
Components |
Standard 20μl assay |
Final Concentration/ Quantity (20 μl assay) |
|
10x Taq pol. Buffer w/o MgCl2 |
2μl |
1x |
5x One Step RT-qPCR buffer* (BR030) |
5 μl |
1x |
|
25mM MgCl2 |
2 μl |
1.5 -4 mM |
|||
|
dNTP mix 10mM each |
0.4μl |
0.2 mM each |
|||
|
10μΜ forward primer |
0.8μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
10μΜ forward primer |
0.8 μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
|
10μΜ reverse primer |
0.8μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
10μΜ reverse primer |
0.8 μl |
0.2-0.8 μM For single target 0.4 μM for multiplex 0.2 μΜ or lower |
|
10 μΜ Taqman Probe |
0.4 μl |
0.2-0.5 μM (~ half or lower than the primer conc.) |
10 μΜ Taqman Probe |
0.4 μl |
0.2-0.5 μM (~ half or lower than the primer conc.) |
|
Template DNA |
Variable |
10 fg-500 ng |
Template DNA |
variable |
10 fg-500 ng |
|
Hot Start Taq DNA pol. (5u/μl) |
0.25-0.5 μl |
1.25-2.5 u/20 μl reaction (0.0625-0.125 u/μl) |
Hot Start Taq DNA pol. (5u/μl) |
0.25-0.5 μl |
1.25-2.5 u/20 μl reaction (0.0625-0.125 u/μl) |
|
Engineered MMLV Reverse transcriptase, 200u/μl (RN001S) |
0.05 μl |
8-10 u/20 μL reaction (0.4-0.5 u/μl) |
Engineered MMLV Reverse transcriptase, 200u/μl (RN001S) |
0.05 μl |
8-10 u/20 μL reaction (0.4-0.5 u/μl) |
|
Sterile ultrapure water |
Up to 20 μl |
N/A |
Sterile ultrapure water |
Up to 20 μl |
N/A |
*BR030 may be separately purchased. It contains an EQ optimized chemistry for qPCR applications along with dNTPs. RN001S is part of the RN012S kit, which may be separately purchased.
Similar setup is followed for SYBR Green based qPCR assays. Instead of Probe one may add SYBR Green in final concentrations of 0.2-2x.
One Step-RT recommended conditions:
|
Step |
Temperature |
Time |
|||||
|
Reverse Transcription step |
55 oC |
15 min |
|||||
|
Initial denaturation/Activation of Taq DNA polymerase/Reverse Transcriptase deactivation |
95oC |
15 min |
|||||
|
3 steps program (30-40 cycles) |
2 Steps program (30-40 cycles) |
||||||
|
Denaturation |
95oC |
10-15 sec |
Denaturation |
95oC |
10-15 sec |
||
|
Annealing |
45-68oC* |
10-20 sec |
Annealing/ extension |
(Tm-8oC)* |
30 sec |
||
|
Extension |
72oC |
1min/kb (6 sec for 100 bp ampliqons) |
|||||
*Annealing temperature depends on primers’ Tm. For two steps programs the primers are designed to have a Tm ~ 68. For most primers sets tested, optimal Ta was found 8oC below the Tm temp. Do not incubate lower than 55 oC to avoid lower polymerase activity!
If you are new user needing qPCR related user-friendly solutions:
HotStart Taq DNA Polymerase is a thermostable DNA polymerase that has been chemically modified to remain inactive until thermal activation. This ensures high specificity by preventing non-specific amplification and primer-dimer formation during reaction setup. It requires excessive thermal activation at 95°C for 15 minutes.
HotStart Taq DNA Polymerase has high processivity up to 5 kb and can reliably amplify substrates as low as 6-12 copies per reaction. The functional quality control tests include amplification of a 5000-bp region of Lambda DNA.
The 15-minute initial activation at 95°C is critical for reactions with very low PCR template copies and for obtaining maximum efficiency in qPCR setups (either TaqMan or SYBR Green chemistry). Using less than 10 minutes may significantly affect reaction efficiency.
No, HotStart Taq DNA Polymerase has no detectable 3'→5' proofreading exonuclease activity. However, it does possess low 5'→3' exonuclease activity, which is typical for Taq polymerase.
Yes, HotStart Taq DNA Polymerase is compatible with qPCR applications including both TaqMan and SYBR Green chemistry. It can also be used for One-Step RT-qPCR when combined with the appropriate reverse transcriptase.